Installation

To use scar, first install it using conda install or Git+pip.

Conda install

1, Install conda

2, Create conda environment:

conda create -n scar

3, Activate conda environment:

conda activate scar

4, Install scar:

conda install -c bioconda scar

5, Activate the scar conda environment:

conda activate scar

Git + pip

1, Clone scar repository:

git clone https://github.com/Novartis/scar.git

2, Enter the cloned directory:

cd scAR

3, Create a conda environment

GPU versionCPU version

Please use scar-gpu if you have an nvidia graphics card and the corresponding driver installed

   conda env create -f scar-gpu.yml

4, Activate the scar conda environment:

conda activate scar