Index A | B | C | D | E | F | G | H | I | L | M | N | O | R | S | T A ambient_profile (scar.main._data_generater.scrnaseq attribute) (scar.main._scar.model attribute) ambient_signals (scar.main._data_generater.scrnaseq attribute) assignment() (scar.main._scar.model method) B bayesfactor (scar.main._scar.model attribute) C capture_rate (scar.main._data_generater.scrnaseq attribute) cell_identity (scar.main._data_generater.scrnaseq attribute) celltype (scar.main._data_generater.scrnaseq attribute) citeseq (class in scar.main._data_generater) count_model (scar.main._scar.model attribute) cropseq (class in scar.main._data_generater) D dropout_prob (scar.main._scar.model attribute) E empty_droplets (scar.main._data_generater.scrnaseq attribute) F feature_assignment (scar.main._scar.model attribute) feature_type (scar.main._scar.model attribute) G generate() (scar.main._data_generater.citeseq method) (scar.main._data_generater.cropseq method) (scar.main._data_generater.scrnaseq method) H heatmap() (scar.main._data_generater.citeseq method) (scar.main._data_generater.cropseq method) (scar.main._data_generater.scrnaseq method) I inference() (scar.main._scar.model method) L latent_dim (scar.main._scar.model attribute) logger (scar.main._scar.model attribute) loss_values (scar.main._scar.model attribute) M model (class in scar.main._scar) module scar.main._data_generater scar.main._scar scar.main._setup N n_cells (scar.main._data_generater.scrnaseq attribute) n_celltypes (scar.main._data_generater.scrnaseq attribute) n_features (scar.main._data_generater.scrnaseq attribute) n_total_molecules (scar.main._data_generater.scrnaseq attribute) native_counts (scar.main._scar.model attribute) native_frequencies (scar.main._scar.model attribute) native_profile (scar.main._data_generater.scrnaseq attribute) native_signals (scar.main._data_generater.scrnaseq attribute) nn_layer1 (scar.main._scar.model attribute) nn_layer2 (scar.main._scar.model attribute) noise_ratio (scar.main._data_generater.scrnaseq attribute) (scar.main._scar.model attribute) O obs_count (scar.main._data_generater.scrnaseq attribute) R raw_count (scar.main._scar.model attribute) runtime (scar.main._scar.model attribute) S scar.main._data_generater module scar.main._scar module scar.main._setup module scrnaseq (class in scar.main._data_generater) setup_anndata() (in module scar.main._setup) sgrna_freq (scar.main._data_generater.cropseq attribute) sparsity (scar.main._scar.model attribute) T total_counts (scar.main._data_generater.scrnaseq attribute) train() (scar.main._scar.model method) trained_model (scar.main._scar.model attribute)